Summary of Gene (AT1G01490)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G01490 5'->3' (-) Promoter sequence AT1G01500.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | - | 182212 | -146 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 182367 | -301 |
TSS clone | T | clone | - | 182357 | -291 |
TSS clone | T | clone | - | 182348 | -282 |
TSS clone | G | clone | - | 182327 | -261 |
TSS clone | G | clone | - | 182325 | -259 |
TSS clone | T | clone | - | 182302 | -236 |
TSS clone | A | clone | - | 182241 | -175 |
TSS clone | A | clone | - | 182089 | -23 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTTCTTCTTCTT | - | 182173 | 182186 | -107 | -120 |
Y Patch | TCTCTCTT | - | 182216 | 182223 | -150 | -157 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCACGCGC | - | 182418 | 182425 | -352 | -359 | |||
AtREG395 | TCACGCGC | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | CACGCGCC | - | 182431 | 182438 | -365 | -372 | |||
AtREG486 | CACGCGCC | PPDB Motif | ACGCGC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 2 | + | 185108 | AT1G01500.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 185137 | AT1G01500.1 |
TSS clone | T | clone | + | 185154 | AT1G01500.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TAAGCCCATTTAACGG | + | 184883 | 184898 | AT1G01500.1 | ||||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG372 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG386 | GCCCATTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG443 | CCCATTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG610 | TTTAACGG | PPDB Motif |   | PLACE Motif | YAACKG, CNGTTR  | ||||
REG | ATGGCCCAGT | + | 184913 | 184922 | AT1G01500.1 | ||||
AtREG437 | ATGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG458 | TGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG384 | GGCCCAGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | AAAAAGCC | + | 184948 | 184955 | AT1G01500.1 | ||||
AtREG589 | AAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TCACACGTGCG | + | 184967 | 184977 | AT1G01500.1 | ||||
AtREG588 | TCACACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG460 | CACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG541 | CACGTGCG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | ||||
REG | AGGGTATTT | + | 184994 | 185002 | AT1G01500.1 | ||||
AtREG567 | AGGGTATT | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
AtREG602 | GGGTATTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTTGACCC | + | 185024 | 185031 | AT1G01500.1 | ||||
AtREG592 | TTTGACCC | PPDB Motif |   | PLACE Motif | TTGAC, TTGACC  | ||||
REG | CGTAATTA | + | 185035 | 185042 | AT1G01500.1 | ||||
AtREG646 | CGTAATTA | ABA | PPDB Motif |   | PLACE Motif |   |