PlantPromoterDB promoter information of AT1G01620.1
Summary of Gene (AT1G01620.1)
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Overview
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Focused view (chromosome 1: 226926-225727)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G01620.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G01620.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | - | 227516 | -340 |
| TSS peak | A | 68 | - | 227234 | -58 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 227366 | -190 |
| TSS clone | G | clone | - | 227311 | -135 |
| TSS clone | A | clone | - | 227243 | -67 |
| TSS clone | C | clone | - | 227238 | -62 |
| TSS clone | A | clone | - | 227237 | -61 |
| TSS clone | T | clone | - | 227236 | -60 |
| TSS clone | C | clone | - | 227233 | -57 |
| TSS clone | C | clone | - | 227232 | -56 |
| TSS clone | A | clone | - | 227230 | -54 |
| TSS clone | T | clone | - | 227229 | -53 |
| TSS clone | T | clone | - | 227226 | -50 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTCTATAAAAC | - | 227265 | 227276 | -89 | -100 |
| Y Patch | TCTTTCTCT | - | 227253 | 227261 | -77 | -85 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCCAACGGTC | - | 227675 | 227684 | -499 | -508 | |||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| AtREG553 | CAACGGTC | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||
| REG | CTAGGCCC | - | 227756 | 227763 | -580 | -587 | |||
| AtREG475 | CTAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||