PlantPromoterDB promoter information of AT1G04620

Summary of Gene (AT1G04620)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G04620 TAIR NCBI
Gene model	AT1G04620
Description	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family; FUNCTIONS IN: coenzyme F420 hydrogenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal (InterPro:IPR007525), Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal (InterPro:IPR007516); Has 371 Blast hits to 370 proteins in 121 species: Archae - 138; Bacteria - 142; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 1291242-1290043)

`Genome position from initiation codon` `AT1G04630.1 TSS from cDNA TSS information AT1G04620 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G04620

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 1286584 -92

TSS clone peak A clone - 1286560 -68

TSS clone T clone - 1286559 -67

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	1286584	-92
TSS clone peak	`A`	clone	-	1286560	-68
TSS clone	`T`	clone	-	1286559	-67

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 23 - 1291075 AT1G04630.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	23	-	1291075	AT1G04630.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 1291078 AT1G04630.1

TSS clone T clone - 1291077 AT1G04630.1

TSS clone G clone - 1291074 AT1G04630.1

TSS clone A clone - 1291048 AT1G04630.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	1291078	AT1G04630.1
TSS clone	`T`	clone	-	1291077	AT1G04630.1
TSS clone	`G`	clone	-	1291074	AT1G04630.1
TSS clone	`A`	clone	-	1291048	AT1G04630.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CTAATGGGCTTAG - 1291126 1291138 AT1G04630.1

AtREG558 CTAATGGG      PPDB Motif GCCCA PLACE Motif

AtREG357 TAATGGGC     PPDB Motif GCCCA PLACE Motif

AtREG372   AATGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    ATGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG426     TGGGCTTA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG634      GGGCTTAG PPDB Motif GCCCA PLACE Motif

REG TAGCCCATTT - 1291167 1291176 AT1G04630.1

AtREG581 TAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372 AGCCCATT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386   GCCCATTT PPDB Motif GCCCA PLACE Motif

REG AAATGGGCTTAG - 1291180 1291191 AT1G04630.1

AtREG386 AAATGGGC     PPDB Motif GCCCA PLACE Motif

AtREG372 AATGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   ATGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG426    TGGGCTTA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG634     GGGCTTAG PPDB Motif GCCCA PLACE Motif

REG CACGTGACTCCACGTGAC - 1291229 1291246 AT1G04630.1

AtREG583 CACGTGAC  CACGTGAC PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG408         TCCACGTG   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

REG CTAAGCCCATTAG + 1291126 1291138 AT1G04635.1

AtREG634 CTAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG426 TAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   AAGCCCAT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372    AGCCCATT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG357     GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG558      CCCATTAG PPDB Motif GCCCA PLACE Motif

REG AAATGGGCTA + 1291167 1291176 AT1G04635.1

AtREG386 AAATGGGC   PPDB Motif GCCCA PLACE Motif

AtREG372 AATGGGCT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG581   ATGGGCTA PPDB Motif GCCCA PLACE Motif TGGGCY

REG CTAAGCCCATTT + 1291180 1291191 AT1G04635.1

AtREG634 CTAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG426 TAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   AAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372    AGCCCATT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386     GCCCATTT PPDB Motif GCCCA PLACE Motif

REG GTCACGTGGAGTCACGTG + 1291229 1291246 AT1G04635.1

AtREG583 GTCACGTG  GTCACGTG PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG408   CACGTGGA         ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG