Summary of Gene (AT1G13370)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G13370 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | - | 4589433 | -911 |
TSS peak | A | 2 | - | 4588613 | -91 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CACTATAAAAT | - | 4588639 | 4588649 | -117 | -127 |
Y Patch | TTTCTCTCT | - | 4588571 | 4588579 | -49 | -57 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCTTTAA | - | 4588707 | 4588714 | -185 | -192 | |||
AtREG639 | GCCTTTAA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | CCAATAAG | - | 4588781 | 4588788 | -259 | -266 | |||
AtREG611 | CCAATAAG | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATAAAGCC | - | 4588885 | 4588892 | -363 | -370 | |||
AtREG601 | ATAAAGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | C | clone | - | 4590410 | AT1G13380.1 |
TSS clone peak | T | clone | - | 4590399 | AT1G13380.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTTC | - | 4590373 | 4590380 | AT1G13380.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AACGACAC | - | 4590468 | 4590475 | AT1G13380.1 | ||||
AtREG527 | AACGACAC | DREB1Aox | PPDB Motif |   | PLACE Motif |   | |||
REG | CACGCGCT | - | 4590499 | 4590506 | AT1G13380.1 | ||||
AtREG381 | CACGCGCT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | ACGTGACA | - | 4590509 | 4590516 | AT1G13380.1 | ||||
AtREG606 | ACGTGACA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | CCGCGTGAA | - | 4590541 | 4590549 | AT1G13380.1 | ||||
AtREG502 | CCGCGTGA | Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG631 | CGCGTGAA | Drought | PPDB Motif |   | PLACE Motif |   | |||
REG | CACGCGCC | - | 4590557 | 4590564 | AT1G13380.1 | ||||
AtREG486 | CACGCGCC | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | GGCCTTTA | - | 4590625 | 4590632 | AT1G13380.1 | ||||
AtREG467 | GGCCTTTA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTAGCCCATCAAGCCCATAT | - | 4590644 | 4590663 | AT1G13380.1 | ||||
AtREG571 | TTAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG581 | TAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG635 | GCCCATCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG525 | CAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG477 | AGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG432 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATTTGGGCTC | - | 4590665 | 4590674 | AT1G13380.1 | ||||
AtREG421 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG469 | TTTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG533 | TTGGGCTC | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |