Summary of Gene (AT1G15330)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G15330 5'->3' (+) Promoter sequence AT1G15320.1
AT1G15320.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | + | 5274346 | -22 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTCGTTTC | + | 5274083 | 5274090 | -285 | -278 | |||
AtREG576 | GTCGTTTC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TACTGGGCCGTT | + | 5274173 | 5274184 | -195 | -184 | |||
AtREG434 | TACTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG384 | ACTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG368 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG377 | GGGCCGTT | PPDB Motif | GCCCA, AAACG(C/G)  | PLACE Motif | GGGCC  | ||||
REG | CTAAGGCCCAATG | + | 5274187 | 5274199 | -181 | -169 | |||
AtREG577 | CTAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG351 | TAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG352 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG461 | GCCCAATG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATGCCACGTGTT | + | 5274204 | 5274215 | -164 | -153 | |||
AtREG448 | ATGCCACG | ABA, DREB1Aox | PPDB Motif |   | PLACE Motif | GCCAC  | |||
AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC  | |||
AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG590 | CACGTGTT | ABA, JA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
REG | ATTGCCACGTG | + | 5274237 | 5274247 | -131 | -121 | |||
AtREG654 | ATTGCCAC | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG452 | TTGCCACG | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC  | |||
REG | ACGGCGTC | + | 5274266 | 5274273 | -102 | -95 | |||
AtREG540 | ACGGCGTC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |