Summary of Gene (AT1G17665)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT1G17670 AT1G17670.1 TSS from cDNA TSS information AT1G17665 5'->3' (-) Promoter sequence AT1G17660
AT1G17660.1 AT1G17680.1 AT1G17680.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 6074488 | -4 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | + | 6076077 | AT1G17680.1, AT1G17680.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 6076078 | AT1G17680.1, AT1G17680.2 |
TSS clone | T | clone | + | 6076131 | AT1G17680.1, AT1G17680.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTATATATATCT | + | 6076043 | 6076054 | AT1G17680.1, AT1G17680.2 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TCACGCGG | + | 6075854 | 6075861 | AT1G17680.1, AT1G17680.2 | ||||
AtREG502 | TCACGCGG | Drought | PPDB Motif |   | PLACE Motif |   | |||
REG | GACCCGGG | + | 6075864 | 6075871 | AT1G17680.1, AT1G17680.2 | ||||
AtREG593 | GACCCGGG | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | CGAACCGGA | + | 6075961 | 6075969 | AT1G17680.1, AT1G17680.2 | ||||
AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CTGACGTG | + | 6075988 | 6075995 | AT1G17680.1, AT1G17680.2 | ||||
AtREG440 | CTGACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |