Summary of Gene (AT1G19800.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT1G19800.3 TSS from cDNA TSS information AT1G19800.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 5 | + | 6846388 | -424 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 6846370 | -442 |
TSS clone | T | clone | + | 6846374 | -438 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTTC | + | 6846352 | 6846359 | -460 | -453 |
Y Patch | CTTTCTCTCTC | + | 6846403 | 6846413 | -409 | -399 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATATTGGGCTTTACGGCCCA | + | 6846266 | 6846285 | -546 | -527 | |||
AtREG509 | ATATTGGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG355 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG402 | ATTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG365 | GGGCTTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG499 | TACGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG368 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |