Summary of Gene (AT1G31460)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G31460 5'->3' (-) Promoter sequence AT1G31480.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 11262737 | -127 |
TSS clone peak | T | clone | - | 11262661 | -51 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTTCTCTCTC | - | 11262678 | 11262689 | -68 | -79 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCAAACCGGTTTAT | - | 11263000 | 11263013 | -390 | -403 | |||
AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG496 | CAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG436 | AAACCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 8 | + | 11265886 | AT1G31480.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTTCTT | + | 11265887 | 11265894 | AT1G31480.1 | |
Y Patch | TTTCTTCTTCTT | + | 11265923 | 11265934 | AT1G31480.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTGACTTT | + | 11265679 | 11265686 | AT1G31480.1 | ||||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | CTACGTGGCAG | + | 11265758 | 11265768 | AT1G31480.1 | ||||
AtREG495 | CTACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG413 | TACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG468 | CGTGGCAG | ABA | PPDB Motif |   | PLACE Motif | GCCAC  |