PlantPromoterDB promoter information of AT1G70490.3
Summary of Gene (AT1G70490.3)
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Overview
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Focused view (chromosome 1: 26566152-26564953)
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Genome position
from initiation codon AT1G70490.2 TSS from cDNA TSS information AT1G70490.3 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G70490.3
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | - | 26565831 | -679 |
| TSS peak | G | 4 | - | 26565806 | -654 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 26565809 | -657 |
| TSS clone | G | clone | - | 26565808 | -656 |
| TSS clone | G | clone | - | 26565806 | -654 |
| TSS clone | T | clone | - | 26565805 | -653 |
| TSS clone | A | clone | - | 26565803 | -651 |
| TSS clone | T | clone | - | 26565802 | -650 |
| TSS clone | T | clone | - | 26565758 | -606 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCCTTATAAAAT | - | 26565833 | 26565844 | -681 | -692 |
| Y Patch | TCTCTTTC | - | 26565766 | 26565773 | -614 | -621 |
| Y Patch | CTTCTCTC | - | 26565779 | 26565786 | -627 | -634 |
| Y Patch | CCCTCTCC | - | 26565843 | 26565850 | -691 | -698 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GAAACGACGAATAAACCGGT | - | 26565853 | 26565872 | -701 | -720 | |||
| AtREG576 | GAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | AAACGACG | PPDB Motif | PLACE Motif | ||||||
| AtREG648 | AACGACGA | PPDB Motif | PLACE Motif | ||||||
| AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TCACGTGTT | - | 26565977 | 26565985 | -825 | -833 | |||
| AtREG628 | TCACGTGT | DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG590 | CACGTGTT | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| REG | CTTATTGG | - | 26566054 | 26566061 | -902 | -909 | |||
| AtREG611 | CTTATTGG | PPDB Motif | PLACE Motif | ||||||
| REG | AAATGACG | - | 26566066 | 26566073 | -914 | -921 | |||
| AtREG657 | AAATGACG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||