Summary of Gene (AT2G17230)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G17230 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 26 | - | 7496016 | -33 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 7496016 | -33 |
TSS clone | C | clone | - | 7496011 | -28 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTCTTC | - | 7496017 | 7496026 | -34 | -43 |
Y Patch | TCTTTCTCCTCTCCT | - | 7496049 | 7496063 | -66 | -80 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AGCGCGTGAAGCCCAC | - | 7496101 | 7496116 | -118 | -133 | |||
AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG631 | CGCGTGAA | Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG476 | GAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG518 | AAGCCCAC | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |