Summary of Gene (AT2G20130.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G20130.1 5'->3' (-) Promoter sequence AT2G20140.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | - | 8692413 | -179 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 8692406 | -172 |
TSS clone | G | clone | - | 8692391 | -157 |
TSS clone | A | clone | - | 8692373 | -139 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCTCT | - | 8692396 | 8692405 | -162 | -171 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAGTCAA | - | 8692498 | 8692505 | -264 | -271 | |||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | TTCGGTTTAA | - | 8692514 | 8692523 | -280 | -289 | |||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TCGGTTTAA | - | 8692535 | 8692543 | -301 | -309 | |||
AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TAGTGGGCCTTAG | - | 8692605 | 8692617 | -371 | -383 | |||
AtREG532 | TAGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG482 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG351 | GGGCCTTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG577 | GGCCTTAG | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTTAGGCCTTTT | - | 8692634 | 8692645 | -400 | -411 | |||
AtREG430 | TTTAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG459 | GGCCTTTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | AGTGGGCTTAT | - | 8692649 | 8692659 | -415 | -425 | |||
AtREG510 | AGTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG518 | GTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG462 | GGGCTTAT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | + | 8692710 | AT2G20140.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 8692682 | AT2G20140.1 |
TSS clone | G | clone | + | 8692712 | AT2G20140.1 |
TSS clone | A | clone | + | 8692720 | AT2G20140.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCTCC | + | 8692667 | 8692674 | AT2G20140.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTGACTTT | + | 8692498 | 8692505 | AT2G20140.1 | ||||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | TTAAACCGAA | + | 8692514 | 8692523 | AT2G20140.1 | ||||
AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTAAACCGA | + | 8692535 | 8692543 | AT2G20140.1 | ||||
AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CTAAGGCCCACTA | + | 8692605 | 8692617 | AT2G20140.1 | ||||
AtREG577 | CTAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG351 | TAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG482 | AGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG532 | GCCCACTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAAAGGCCTAAA | + | 8692634 | 8692645 | AT2G20140.1 | ||||
AtREG459 | AAAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG430 | GGCCTAAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATAAGCCCACT | + | 8692649 | 8692659 | AT2G20140.1 | ||||
AtREG462 | ATAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG518 | AAGCCCAC | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG510 | AGCCCACT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |