Summary of Gene (AT2G25240.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G25240.1 5'->3' (-) Promoter sequence AT2G25250.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 8 | + | 10753842 | AT2G25250.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 10753836 | AT2G25250.1 |
TSS clone | C | clone | + | 10753843 | AT2G25250.1 |
TSS clone | T | clone | + | 10753846 | AT2G25250.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TGTATAAAAA | + | 10753803 | 10753812 | AT2G25250.1 | |
Y Patch | TCTCTCCTCTT | + | 10753813 | 10753823 | AT2G25250.1 | |
Y Patch | CTTCTCCTTC | + | 10753877 | 10753886 | AT2G25250.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAGCGCGTGA | + | 10753701 | 10753710 | AT2G25250.1 | ||||
AtREG492 | AAGCGCGT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | AGACACGT | + | 10753774 | 10753781 | AT2G25250.1 | ||||
AtREG470 | AGACACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  |