Summary of Gene (AT2G25870.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G25870.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 10 | + | 11031121 | -38 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 11031094 | -65 |
TSS clone | A | clone | + | 11031115 | -44 |
TSS clone | T | clone | + | 11031120 | -39 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCTTCTCTC | + | 11031130 | 11031141 | -29 | -18 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AACCCGGT | + | 11030865 | 11030872 | -294 | -287 | |||
AtREG516 | AACCCGGT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTTCCGGTTCG | + | 11030910 | 11030920 | -249 | -239 | |||
AtREG644 | TTTCCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG423 | CCGGTTCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ATCCGGTTTAA | + | 11030928 | 11030938 | -231 | -221 | |||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ATCCGGTTTAT | + | 11031028 | 11031038 | -131 | -121 | |||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTCGGTTTAG | + | 11031052 | 11031061 | -107 | -98 | |||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TACACGTGTCAT | + | 11041640 | 11041651 | AT2G25900.1 | ||||
AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACACNNG  | |||
AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC  | |||
AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG438 | CGTGTCAT | ABA | PPDB Motif |   | PLACE Motif |   | |||
REG | TTTGACCC | + | 11041737 | 11041744 | AT2G25900.1 | ||||
AtREG592 | TTTGACCC | PPDB Motif |   | PLACE Motif | TTGAC, TTGACC  |