PlantPromoterDB promoter information of AT2G28900
Summary of Gene (AT2G28900)
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Overview
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Focused view (chromosome 2: 12417159-12415960)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G28900 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G28900
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | T | 4 | - | 12416187 | -728 |
| TSS peak | A | 4 | - | 12415527 | -68 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 12415578 | -119 |
| TSS clone | C | clone | - | 12415550 | -91 |
| TSS clone | A | clone | - | 12415549 | -90 |
| TSS clone | A | clone | - | 12415548 | -89 |
| TSS clone | G | clone | - | 12415532 | -73 |
| TSS clone | C | clone | - | 12415528 | -69 |
| TSS clone | G | clone | - | 12415526 | -67 |
| TSS clone | A | clone | - | 12415521 | -62 |
| TSS clone | A | clone | - | 12415517 | -58 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTTTATAT | - | 12415553 | 12415561 | -94 | -102 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGGTCC | - | 12415619 | 12415626 | -160 | -167 | |||
| AtREG523 | GTGGGTCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | CGTCATTT | - | 12415658 | 12415665 | -199 | -206 | |||
| AtREG657 | CGTCATTT | PPDB Motif | PLACE Motif | ||||||
| REG | GTGTCGTT | - | 12415730 | 12415737 | -271 | -278 | |||
| AtREG527 | GTGTCGTT | DREB1Aox | PPDB Motif | PLACE Motif | |||||
| REG | ACGTGTGA | - | 12416228 | 12416235 | -769 | -776 | |||
| AtREG588 | ACGTGTGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | GTTCGGTT | - | 12416457 | 12416464 | -998 | -1005 | |||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||