PlantPromoterDB promoter information of AT2G29670
Summary of Gene (AT2G29670)
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Overview
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Focused view (chromosome 2: 12685745-12684546)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G29670 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G29670
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | - | 12685159 | -414 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 12685087 | -342 |
| TSS clone | G | clone | - | 12685086 | -341 |
| TSS clone | C | clone | - | 12685085 | -340 |
| TSS clone | G | clone | - | 12685084 | -339 |
| TSS clone | T | clone | - | 12685083 | -338 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCATATAT | - | 12685190 | 12685197 | -445 | -452 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATAACCGGCTTTAA | - | 12685203 | 12685216 | -458 | -471 | |||
| AtREG548 | ATAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG545 | GGCTTTAA | PPDB Motif | PLACE Motif | ||||||
| REG | AGTCGGTT | - | 12685261 | 12685268 | -516 | -523 | |||
| AtREG641 | AGTCGGTT | PPDB Motif | AACCG(G/A), CCGAC | PLACE Motif | CCGAC, RCCGAC | ||||
| REG | TCCGGTTAA | - | 12685276 | 12685284 | -531 | -539 | |||
| AtREG621 | TCCGGTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG501 | CCGGTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | TTAAACCGTCAGA | - | 12685313 | 12685325 | -568 | -580 | |||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||
| AtREG625 | ACCGTCAG | PPDB Motif | PLACE Motif | ||||||
| AtREG622 | CCGTCAGA | PPDB Motif | PLACE Motif | ||||||
| REG | CCCAATAG | - | 12685348 | 12685355 | -603 | -610 | |||
| AtREG624 | CCCAATAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GACCGTTG | - | 12685433 | 12685440 | -688 | -695 | |||
| AtREG553 | GACCGTTG | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||