Summary of Gene (AT2G30330.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G30330.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | C | 2 | - | 12929723 | -35 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 12929737 | -49 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCAAAACGGCGCGT | - | 12929781 | 12929794 | -93 | -106 | |||
AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG531 | AAAACGGC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG524 | AAACGGCG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG538 | CGGCGCGT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | CGTGACGT | - | 12929804 | 12929811 | -116 | -123 | |||
AtREG489 | CGTGACGT | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |