PlantPromoterDB promoter information of AT2G38130.1

Summary of Gene (AT2G38130.1)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G38130 TAIR NCBI
Gene model	AT2G38130.1
Description	Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.

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Overview

Focused view (chromosome 2: 15981545-15980346)

`Genome position from initiation codon` `AT2G38130.2 TSS from cDNA TSS information AT2G38130.1 5'->3' (-) Promoter sequence AT2G38140.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G38130.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak C 2 - 15980713 -568

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`C`	2	-	15980713	-568

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone - 15980715 -570

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	-	15980715	-570

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTTCTTCGTCTTCTCTTC - 15980710 15980729 -565 -584

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTTCTTCGTCTTCTCTTC`	-	15980710	15980729	-565	-584
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TGTCACGTGTG - 15980766 15980776 -621 -631

AtREG606 TGTCACGT    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG583 GTCACGTG   PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG628   TCACGTGT DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG460    CACGTGTG ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

REG TTAAAGCCCAAAT - 15980799 15980811 -654 -666

AtREG545 TTAAAGCC      PPDB Motif PLACE Motif

AtREG365 TAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469     AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG421      GCCCAAAT PPDB Motif GCCCA PLACE Motif

REG CAATTGGGCTTAT - 15980813 15980825 -668 -680

AtREG647 CAATTGGG      PPDB Motif PLACE Motif

AtREG418 AATTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG402   ATTGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    TTGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG426     TGGGCTTA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG462      GGGCTTAT PPDB Motif GCCCA PLACE Motif

REG ATTTGGGCTTTAA - 15980829 15980841 -684 -696

AtREG421 ATTTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG365     GGGCTTTA PPDB Motif GCCCA PLACE Motif

AtREG545      GGCTTTAA PPDB Motif PLACE Motif

REG GGCTTTTA - 15980855 15980862 -710 -717

AtREG549 GGCTTTTA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TGTCACGTGTG`		-	15980766	15980776	-621	-631
	AtREG606	`TGTCACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG583	`GTCACGTG`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG628	`TCACGTGT`	DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG460	`CACGTGTG`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
REG	`TTAAAGCCCAAAT`		-	15980799	15980811	-654	-666
	AtREG545	`TTAAAGCC`		PPDB Motif		PLACE Motif
	AtREG365	`TAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG469	`AGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG421	`GCCCAAAT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CAATTGGGCTTAT`		-	15980813	15980825	-668	-680
	AtREG647	`CAATTGGG`		PPDB Motif		PLACE Motif
	AtREG418	`AATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG402	`ATTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`TTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG426	`TGGGCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG462	`GGGCTTAT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ATTTGGGCTTTAA`		-	15980829	15980841	-684	-696
	AtREG421	`ATTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG469	`TTTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`TTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG365	`GGGCTTTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG545	`GGCTTTAA`		PPDB Motif		PLACE Motif
REG	`GGCTTTTA`		-	15980855	15980862	-710	-717
	AtREG549	`GGCTTTTA`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 21 + 15980889 AT2G38140.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	21	+	15980889	AT2G38140.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone C clone + 15980890 AT2G38140.1

TSS clone G clone + 15980907 AT2G38140.1

TSS clone G clone + 15980908 AT2G38140.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`C`	clone	+	15980890	AT2G38140.1
TSS clone	`G`	clone	+	15980907	AT2G38140.1
TSS clone	`G`	clone	+	15980908	AT2G38140.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTTCT + 15980898 15980906 AT2G38140.1

Y Patch TCTTCTTCTTC + 15980910 15980920 AT2G38140.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTTCT`	+	15980898	15980906	AT2G38140.1
Y Patch	`TCTTCTTCTTC`	+	15980910	15980920	AT2G38140.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CACACGTGACA + 15980766 15980776 AT2G38140.1

AtREG460 CACACGTG    ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG628 ACACGTGA   DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG583   CACGTGAC PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG606    ACGTGACA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG ATTTGGGCTTTAA + 15980799 15980811 AT2G38140.1

AtREG421 ATTTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG365     GGGCTTTA PPDB Motif GCCCA PLACE Motif

AtREG545      GGCTTTAA PPDB Motif PLACE Motif

REG ATAAGCCCAATTG + 15980813 15980825 AT2G38140.1

AtREG462 ATAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG426 TAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402    AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG418     GCCCAATT PPDB Motif GCCCA PLACE Motif

AtREG647      CCCAATTG PPDB Motif PLACE Motif

REG TTAAAGCCCAAAT + 15980829 15980841 AT2G38140.1

AtREG545 TTAAAGCC      PPDB Motif PLACE Motif

AtREG365 TAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469     AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG421      GCCCAAAT PPDB Motif GCCCA PLACE Motif