Summary of Gene (AT2G39570)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G39570 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 17 | + | 16507898 | -65 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 16507898 | -65 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCATATATATAAT | + | 16507862 | 16507874 | -101 | -89 |
Y Patch | CTTTCTTC | + | 16507856 | 16507863 | -107 | -100 |
Y Patch | TTTCTTCTTCCT | + | 16507878 | 16507889 | -85 | -74 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AATACCCT | + | 16507682 | 16507689 | -281 | -274 | |||
AtREG567 | AATACCCT | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | AGACACGTAGGTCCCAC | + | 16507776 | 16507792 | -187 | -171 | |||
AtREG470 | AGACACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG557 | GACACGTA | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG406 | GGTCCCAC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | CCCAATAA | + | 16507808 | 16507815 | -155 | -148 | |||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |