Summary of Gene (AT2G42220)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT2G42210.2 AT2G42210.3 AT2G42210.4 TSS from cDNA TSS information AT2G42220 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 30 | + | 17592089 | -16 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 17592057 | -48 |
TSS clone | C | clone | + | 17592064 | -41 |
TSS clone | C | clone | + | 17592075 | -30 |
TSS clone | C | clone | + | 17592086 | -19 |
TSS clone | A | clone | + | 17592089 | -16 |
TSS clone | C | clone | + | 17592100 | -5 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TACGTGGCAAT | + | 17591984 | 17591994 | -121 | -111 | |||
AtREG413 | TACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG452 | CGTGGCAA | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG654 | GTGGCAAT | PPDB Motif |   | PLACE Motif | GCCAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 10 | + | 17590212 | AT2G42210.1, AT2G42210.2, AT2G42210.3, AT2G42210.4 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 17590213 | AT2G42210.1, AT2G42210.2, AT2G42210.3, AT2G42210.4 |
TSS clone | A | clone | + | 17590223 | AT2G42210.1, AT2G42210.2, AT2G42210.3, AT2G42210.4 |
TSS clone | C | clone | + | 17590241 | AT2G42210.1, AT2G42210.2, AT2G42210.3, AT2G42210.4 |
TSS clone | T | clone | + | 17590244 | AT2G42210.1, AT2G42210.2, AT2G42210.3, AT2G42210.4 |
TSS clone | T | clone | + | 17590247 | AT2G42210.1, AT2G42210.2, AT2G42210.3, AT2G42210.4 |
TSS clone | G | clone | + | 17590276 | AT2G42210.1, AT2G42210.2, AT2G42210.3, AT2G42210.4 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTCT | + | 17590165 | 17590172 | AT2G42210.1, AT2G42210.2, AT2G42210.3, AT2G42210.4 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TAATTGGGCTTT | + | 17590157 | 17590168 | AT2G42210.1, AT2G42210.2, AT2G42210.3, AT2G42210.4 | ||||
AtREG600 | TAATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG418 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG402 | ATTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |