Summary of Gene (AT2G42310.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT2G42300.2 TSS from cDNA TSS information AT2G42310.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 51 | + | 17625225 | -26 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 17625211 | -40 |
TSS clone | C | clone | + | 17625215 | -36 |
TSS clone | T | clone | + | 17625216 | -35 |
TSS clone | C | clone | + | 17625222 | -29 |
TSS clone | A | clone | + | 17625225 | -26 |
TSS clone | C | clone | + | 17625226 | -25 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCAATTA | + | 17625098 | 17625105 | -153 | -146 | |||
AtREG600 | CCCAATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCGGTTCGGTTCG | + | 17625140 | 17625152 | -111 | -99 | |||
AtREG575 | TCGGTTCGGTTCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG456 | CGGTTCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG451 | GGTTCGGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | + | 17621202 | AT2G42300.1, AT2G42300.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 17621157 | AT2G42300.1, AT2G42300.2 |
TSS clone | A | clone | + | 17621166 | AT2G42300.1, AT2G42300.2 |
TSS clone | A | clone | + | 17621209 | AT2G42300.1, AT2G42300.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTTC | + | 17621192 | 17621199 | AT2G42300.1, AT2G42300.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATAAAGCCCAATAGGCCCAATT | + | 17621066 | 17621087 | AT2G42300.1, AT2G42300.2 | ||||
AtREG601 | ATAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG365 | TAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG624 | CCCAATAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG424 | AATAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG362 | ATAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG358 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG352 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG418 | GCCCAATT | PPDB Motif | GCCCA  | PLACE Motif |   |