PlantPromoterDB promoter information of AT2G42310.1

Summary of Gene (AT2G42310.1)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G42310 TAIR NCBI
Gene model	AT2G42310.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, respiratory chain complex I; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 77 Blast hits to 77 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 32; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 2: 17620501-17621700)

`Genome position from initiation codon` `AT2G42300.1 AT2G42300.2 TSS from cDNA TSS information AT2G42310.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G42310.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 51 + 17625225 -26

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	51	+	17625225	-26

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 17625211 -40

TSS clone C clone + 17625215 -36

TSS clone T clone + 17625216 -35

TSS clone C clone + 17625222 -29

TSS clone A clone + 17625225 -26

TSS clone C clone + 17625226 -25

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	17625211	-40
TSS clone	`C`	clone	+	17625215	-36
TSS clone	`T`	clone	+	17625216	-35
TSS clone	`C`	clone	+	17625222	-29
TSS clone	`A`	clone	+	17625225	-26
TSS clone	`C`	clone	+	17625226	-25

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CCCAATTA + 17625098 17625105 -153 -146

AtREG600 CCCAATTA PPDB Motif GCCCA PLACE Motif

REG TCGGTTCGGTTCG + 17625140 17625152 -111 -99

AtREG575 TCGGTTCGGTTCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG456 CGGTTCGG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG451   GGTTCGGT    PPDB Motif PLACE Motif

AtREG556    GTTCGGTT   PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CCCAATTA`		+	17625098	17625105	-153	-146
	AtREG600	`CCCAATTA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TCGGTTCGGTTCG`		+	17625140	17625152	-111	-99
	AtREG575	`TCGGTTCGGTTCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG456	`CGGTTCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG451	`GGTTCGGT`		PPDB Motif		PLACE Motif
	AtREG556	`GTTCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 + 17621202 AT2G42300.1, AT2G42300.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	+	17621202	AT2G42300.1, AT2G42300.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 17621157 AT2G42300.1, AT2G42300.2

TSS clone A clone + 17621166 AT2G42300.1, AT2G42300.2

TSS clone A clone + 17621209 AT2G42300.1, AT2G42300.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	17621157	AT2G42300.1, AT2G42300.2
TSS clone	`A`	clone	+	17621166	AT2G42300.1, AT2G42300.2
TSS clone	`A`	clone	+	17621209	AT2G42300.1, AT2G42300.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTTTCTTC + 17621192 17621199 AT2G42300.1, AT2G42300.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTTTCTTC`	+	17621192	17621199	AT2G42300.1, AT2G42300.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ATAAAGCCCAATAGGCCCAATT + 17621066 17621087 AT2G42300.1, AT2G42300.2

AtREG601 ATAAAGCC               PPDB Motif PLACE Motif

AtREG365 TAAAGCCC              PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA             PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA            PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402     AGCCCAAT           PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355      GCCCAATA          PPDB Motif GCCCA PLACE Motif

AtREG624       CCCAATAG         PPDB Motif GCCCA PLACE Motif

AtREG424          AATAGGCC      PPDB Motif PLACE Motif

AtREG362           ATAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358            TAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356             AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352              GGCCCAAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG418               GCCCAATT PPDB Motif GCCCA PLACE Motif