Summary of Gene (AT2G47060.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G47060.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 15 | - | 19334971 | -212 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 19334971 | -212 |
TSS clone | T | clone | - | 19334969 | -210 |
TSS clone | A | clone | - | 19334826 | -67 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTCT | - | 19334942 | 19334949 | -183 | -190 |
Y Patch | TTCTTCTTC | - | 19334951 | 19334959 | -192 | -200 |
Y Patch | TTTCTCTCT | - | 19334990 | 19334998 | -231 | -239 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATCCAACGG | - | 19335068 | 19335076 | -309 | -317 | |||
AtREG586 | ATCCAACG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
AtREG554 | TCCAACGG | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | ||||
REG | CGTTGGAT | - | 19335096 | 19335103 | -337 | -344 | |||
AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | GTGGCAAT | - | 19335109 | 19335116 | -350 | -357 | |||
AtREG654 | GTGGCAAT | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
REG | CGTCATTT | - | 19335182 | 19335189 | -423 | -430 | |||
AtREG657 | CGTCATTT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 2 | - | 19332722 | AT2G47050.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 19332641 | AT2G47050.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAACGCC | - | 19332770 | 19332777 | AT2G47050.1 | ||||
AtREG650 | AAAACGCC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |