Summary of Gene (AT3G04550)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT3G04550.1 TSS from cDNA TSS information AT3G04550 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 15 | + | 1225922 | -39 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | + | 1225923 | -38 |
TSS clone | T | clone | + | 1225930 | -31 |
TSS clone | A | clone | + | 1225933 | -28 |
TSS clone | C | clone | + | 1225944 | -17 |
TSS clone | A | clone | + | 1225948 | -13 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAGTCAA | + | 1225731 | 1225738 | -230 | -223 | |||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | ATCCGGTTTAT | + | 1225841 | 1225851 | -120 | -110 | |||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ATCCGGTTTAA | + | 1225856 | 1225866 | -105 | -95 | |||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CGGTTTGG | + | 1225870 | 1225877 | -91 | -84 | |||
AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |