Summary of Gene (AT3G05890)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G05890 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 10 | - | 1758511 | -59 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 1758510 | -58 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GTCTATATATATATAG | - | 1758535 | 1758550 | -83 | -98 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACCACGTGGAT | - | 1758577 | 1758587 | -125 | -135 | |||
AtREG544 | ACCACGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG408 | CACGTGGA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | |||
AtREG547 | ACGTGGAT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 13 | - | 1756573 | AT3G05880.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 1756572 | AT3G05880.1 |
TSS clone | T | clone | - | 1756570 | AT3G05880.1 |
TSS clone | A | clone | - | 1756569 | AT3G05880.1 |
TSS clone | G | clone | - | 1756568 | AT3G05880.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCTCTATATAATG | - | 1756596 | 1756608 | AT3G05880.1 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TACGTGGCT | - | 1756630 | 1756638 | AT3G05880.1 | ||||
AtREG413 | TACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG450 | ACGTGGCT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  |