Summary of Gene (AT3G07050)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT3G07055 AT3G07055.1 TSS from cDNA TSS information AT3G07050 5'->3' (-) Promoter sequence AT3G07060.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 2232329 | -50 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 2232346 | -67 |
TSS clone | T | clone | - | 2232345 | -66 |
TSS clone | T | clone | - | 2232310 | -31 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCCTTCTC | - | 2232348 | 2232357 | -69 | -78 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGGGTCGGGT | - | 2232412 | 2232421 | -133 | -142 | |||
AtREG375 | CGGGTCGG | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG442 | GGGTCGGG | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG405 | GGTCGGGT | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
REG | TTCGGGTCA | - | 2232429 | 2232437 | -150 | -158 | |||
AtREG597 | TTCGGGTC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
AtREG617 | TCGGGTCA | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCCAATTA | - | 2232461 | 2232468 | -182 | -189 | |||
AtREG600 | CCCAATTA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |