PlantPromoterDB promoter information of AT3G15620
Summary of Gene (AT3G15620)
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Overview
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Focused view (chromosome 3: 5297548-5296349)
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Genome position
from initiation codon AT3G15620.2 AT3G15630.1 TSS from cDNA TSS information AT3G15620 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G15620
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 5297471 | -923 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTTCCT | - | 5297478 | 5297485 | -930 | -937 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAATACCCTTA | - | 5297701 | 5297711 | -1153 | -1163 | |||
| AtREG602 | AAATACCC | PPDB Motif | PLACE Motif | ||||||
| AtREG567 | AATACCCT | PPDB Motif | ACCCT | PLACE Motif | |||||
| AtREG623 | ATACCCTT | PPDB Motif | ACCCT | PLACE Motif | |||||
| AtREG570 | TACCCTTA | PPDB Motif | ACCCT | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||