PlantPromoterDB promoter information of AT3G17800.2
Summary of Gene (AT3G17800.2)
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Overview
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Focused view (chromosome 3: 6093873-6092674)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G17800.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G17800.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 6093151 | -278 |
| TSS clone | T | clone | - | 6093028 | -155 |
| TSS clone | A | clone | - | 6093026 | -153 |
| TSS clone | G | clone | - | 6093025 | -152 |
| TSS clone | T | clone | - | 6093006 | -133 |
| TSS clone peak | C | clone | - | 6093000 | -127 |
| TSS clone | A | clone | - | 6092971 | -98 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTCTCTCTC | - | 6092957 | 6092968 | -84 | -95 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CCGTTGGA | + | 6093857 | 6093864 | AT3G17810.1 | ||||
| AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||