Summary of Gene (AT3G17810.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G17810.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 17 | + | 6094135 | -144 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 6094113 | -166 |
TSS clone | A | clone | + | 6094122 | -157 |
TSS clone | T | clone | + | 6094133 | -146 |
TSS clone | T | clone | + | 6094136 | -143 |
TSS clone | A | clone | + | 6094143 | -136 |
TSS clone | A | clone | + | 6094151 | -128 |
TSS clone | C | clone | + | 6094152 | -127 |
TSS clone | A | clone | + | 6094244 | -35 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTTCTCTT | + | 6094095 | 6094104 | -184 | -175 |
Y Patch | TCTTTCCT | + | 6094125 | 6094132 | -154 | -147 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGTTGGA | + | 6093857 | 6093864 | -422 | -415 | |||
AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | ||||
REG | CACGTGGCAT | + | 6094052 | 6094061 | -227 | -218 | |||
AtREG367 | CACGTGGC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC  | |||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG448 | CGTGGCAT | ABA, DREB1Aox | PPDB Motif |   | PLACE Motif | GCCAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |