Summary of Gene (AT3G18160.2)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT3G18160.3 AT3G18165.1 TSS from cDNA TSS information AT3G18160.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 6220653 | -669 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CATCTCTC | + | 6220699 | 6220706 | -623 | -616 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGGTTCGGTTT | + | 6220396 | 6220406 | -926 | -916 | |||
AtREG456 | CGGTTCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG451 | GGTTCGGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TGGTTCGGTTAAGTTCGGTTAAA | + | 6220550 | 6220572 | -772 | -750 | |||
AtREG655 | TGGTTCGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG451 | GGTTCGGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG556 | GTTCGGTT GTTCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG605 | CGGTTAAG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 34 | + | 6223200 | AT3G18165.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 6223188 | AT3G18165.1 |
TSS clone | A | clone | + | 6223200 | AT3G18165.1 |
TSS clone | G | clone | + | 6223201 | AT3G18165.1 |
TSS clone | T | clone | + | 6223205 | AT3G18165.1 |
TSS clone | C | clone | + | 6223208 | AT3G18165.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCTTCTT | + | 6223160 | 6223168 | AT3G18165.1 | |
Y Patch | TCTTTCTC | + | 6223192 | 6223199 | AT3G18165.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TAGGGCCCTAGAAGCCCAAGGCCCAATAAAACCGGGTCGG | + | 6223111 | 6223150 | AT3G18165.1 | ||||
AtREG387 | TAGGGCCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG476 | GAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG398 | CAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG352 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG455 | AACCGGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG463 | ACCGGGTC | PPDB Motif | AACCG(G/A), GGGACCC  | PLACE Motif |   | ||||
AtREG494 | CCGGGTCG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG375 | CGGGTCGG | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  |