PlantPromoterDB promoter information of AT3G18160.2

Summary of Gene (AT3G18160.2)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G18160 TAIR NCBI
Gene model	AT3G18160.2
Description	peroxin-3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: peroxisome, integral to peroxisomal membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxin-3 (InterPro:IPR006966); BEST Arabidopsis thaliana protein match is: peroxin-3 family protein (TAIR:AT1G48635.1).

#

Overview

Focused view (chromosome 3: 6222622-6223821)

`Genome position from initiation codon` `AT3G18160.1 AT3G18160.3 AT3G18165.1 TSS from cDNA TSS information AT3G18160.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G18160.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone + 6220653 -669

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	+	6220653	-669

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CATCTCTC + 6220699 6220706 -623 -616

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CATCTCTC`	+	6220699	6220706	-623	-616
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CGGTTCGGTTT + 6220396 6220406 -926 -916

AtREG456 CGGTTCGG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG451 GGTTCGGT   PPDB Motif PLACE Motif

AtREG556   GTTCGGTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG568    TTCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

REG TGGTTCGGTTAAGTTCGGTTAAA + 6220550 6220572 -772 -750

AtREG655 TGGTTCGG                PPDB Motif PLACE Motif

AtREG451 GGTTCGGT               PPDB Motif PLACE Motif

AtREG556   GTTCGGTT  GTTCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG605      CGGTTAAG           PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG645                CGGTTAAA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CGGTTCGGTTT`		+	6220396	6220406	-926	-916
	AtREG456	`CGGTTCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG451	`GGTTCGGT`		PPDB Motif		PLACE Motif
	AtREG556	`GTTCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG568	`TTCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TGGTTCGGTTAAGTTCGGTTAAA`		+	6220550	6220572	-772	-750
	AtREG655	`TGGTTCGG`		PPDB Motif		PLACE Motif
	AtREG451	`GGTTCGGT`		PPDB Motif		PLACE Motif
	AtREG556	`GTTCGGTT GTTCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG605	`CGGTTAAG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG645	`CGGTTAAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 34 + 6223200 AT3G18165.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	34	+	6223200	AT3G18165.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 6223188 AT3G18165.1

TSS clone A clone + 6223200 AT3G18165.1

TSS clone G clone + 6223201 AT3G18165.1

TSS clone T clone + 6223205 AT3G18165.1

TSS clone C clone + 6223208 AT3G18165.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	6223188	AT3G18165.1
TSS clone	`A`	clone	+	6223200	AT3G18165.1
TSS clone	`G`	clone	+	6223201	AT3G18165.1
TSS clone	`T`	clone	+	6223205	AT3G18165.1
TSS clone	`C`	clone	+	6223208	AT3G18165.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTTCTTCTT + 6223160 6223168 AT3G18165.1

Y Patch TCTTTCTC + 6223192 6223199 AT3G18165.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTTCTTCTT`	+	6223160	6223168	AT3G18165.1
Y Patch	`TCTTTCTC`	+	6223192	6223199	AT3G18165.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TAGGGCCCTAGAAGCCCAAGGCCCAATAAAACCGGGTCGG + 6223111 6223150 AT3G18165.1

AtREG387 TAGGGCCCTA                               PPDB Motif GCCCA PLACE Motif GGGCC

AtREG476           GAAGCCCA                       PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407            AAGCCCAA                      PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG398                 CAAGGCCC                 PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353                  AAGGCCCA                PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356                   AGGCCCAA               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352                    GGCCCAAT              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355                     GCCCAATA             PPDB Motif GCCCA PLACE Motif

AtREG417                      CCCAATAA            PPDB Motif GCCCA PLACE Motif

AtREG542                            AAAACCGG      PPDB Motif AACCG(G/A) PLACE Motif

AtREG455                              AACCGGGT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG463                               ACCGGGTC   PPDB Motif AACCG(G/A), GGGACCC PLACE Motif

AtREG494                                CCGGGTCG PPDB Motif PLACE Motif

AtREG375                                 CGGGTCGG PPDB Motif CCGAC PLACE Motif CCGAC