Summary of Gene (AT3G18480.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G18480.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 2 | + | 6336746 | -178 |
TSS peak | G | 2 | + | 6336767 | -157 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 6336748 | -176 |
TSS clone | G | clone | + | 6336772 | -152 |
TSS clone | A | clone | + | 6336788 | -136 |
TSS clone | A | clone | + | 6336819 | -105 |
TSS clone | T | clone | + | 6336830 | -94 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TACTGGGCCTAT | + | 6336603 | 6336614 | -321 | -310 | |||
AtREG434 | TACTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG384 | ACTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG410 | CTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG362 | GGGCCTAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | AATAGCCCATTG | + | 6336628 | 6336639 | -296 | -285 | |||
AtREG584 | AATAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG581 | TAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG372 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG551 | GCCCATTG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAACGCGTTT | - | 6336083 | 6336093 | AT3G18470.1 | ||||
AtREG566 | AAAACGCG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG633 | AAACGCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |