Summary of Gene (AT3G47500)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G47500 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 15 | - | 17506057 | -93 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 17506053 | -89 |
TSS clone | A | clone | - | 17506049 | -85 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTCTTCTT | - | 17506026 | 17506036 | -62 | -72 |
Y Patch | TTTCCTCCTTCTCTT | - | 17506088 | 17506102 | -124 | -138 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCTGACGTGT | - | 17506102 | 17506111 | -138 | -147 | |||
AtREG515 | GCTGACGT | SA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
AtREG440 | CTGACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG517 | TGACGTGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | AACCCGACAACCCGACCCGGT | - | 17506177 | 17506197 | -213 | -233 | |||
AtREG580 | AACCCGACAACCCGAC | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG405 | ACCCGACC | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG442 | CCCGACCC | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG375 | CCGACCCG | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG494 | CGACCCGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG463 | GACCCGGT | PPDB Motif | AACCG(G/A), GGGACCC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |