Summary of Gene (AT3G52930)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G52930 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 387 | - | 19628939 | -65 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 19629073 | -199 |
TSS clone | A | clone | - | 19628942 | -68 |
TSS clone | C | clone | - | 19628941 | -67 |
TSS clone | A | clone | - | 19628939 | -65 |
TSS clone | C | clone | - | 19628938 | -64 |
TSS clone | T | clone | - | 19628934 | -60 |
TSS clone | G | clone | - | 19628931 | -57 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GCTATAAAAC | - | 19628966 | 19628975 | -92 | -101 |
Y Patch | TTTCTCTCT | - | 19628900 | 19628908 | -26 | -34 |
Y Patch | CCTTCTTCC | - | 19628922 | 19628930 | -48 | -56 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATCCAACGG | - | 19629058 | 19629066 | -184 | -192 | |||
AtREG586 | ATCCAACG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
AtREG554 | TCCAACGG | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | ||||
REG | TAAGGGGT | - | 19629100 | 19629107 | -226 | -233 | |||
AtREG636 | TAAGGGGT | PPDB Motif | ACCCCT  | PLACE Motif |   | ||||
REG | TTACCCCT | - | 19629136 | 19629143 | -262 | -269 | |||
AtREG642 | TTACCCCT | PPDB Motif | ACCCCT  | PLACE Motif |   | ||||
REG | GTAAGGCC | - | 19629185 | 19629192 | -311 | -318 | |||
AtREG530 | GTAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TCTGACGGTTTGGGCCGT | - | 19629194 | 19629211 | -320 | -337 | |||
AtREG622 | TCTGACGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG625 | CTGACGGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG474 | GTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG373 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG414 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG368 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |