Summary of Gene (AT4G12720.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT4G12720.3 TSS from cDNA TSS information AT4G12720.1 5'->3' (+) Promoter sequence AT4G12710.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | + | 7487354 | -362 |
TSS peak | A | 17 | + | 7487567 | -149 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 7487476 | -240 |
TSS clone | A | clone | + | 7487567 | -149 |
TSS clone | A | clone | + | 7487568 | -148 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TGTATAAA | + | 7487532 | 7487539 | -184 | -177 |
Y Patch | CTTCTTCT | + | 7487336 | 7487343 | -380 | -373 |
Y Patch | CCTTCTCT | + | 7487525 | 7487532 | -191 | -184 |
Y Patch | TTCTCTCC | + | 7487574 | 7487581 | -142 | -135 |
Y Patch | TCTCCTTC | + | 7487604 | 7487611 | -112 | -105 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGGTTAAA | + | 7487141 | 7487148 | -575 | -568 | |||
AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | TAAACGAC | + | 7487238 | 7487245 | -478 | -471 | |||
AtREG565 | TAAACGAC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | - | 7486777 | AT4G12710.1 |
TSS peak | A | 4 | - | 7486773 | AT4G12710.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 7486801 | AT4G12710.1 |
TSS clone | A | clone | - | 7486783 | AT4G12710.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATATGGGCT | - | 7486856 | 7486864 | AT4G12710.1 | ||||
AtREG432 | ATATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG477 | TATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |