Summary of Gene (AT4G14960)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT4G14960 5'->3' (-) Promoter sequence AT4G14970.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | - | 8550418 | -99 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 8550431 | -112 |
TSS clone | A | clone | - | 8550430 | -111 |
TSS clone | A | clone | - | 8550429 | -110 |
TSS clone | C | clone | - | 8550428 | -109 |
TSS clone | T | clone | - | 8550426 | -107 |
TSS clone | A | clone | - | 8550425 | -106 |
TSS clone | G | clone | - | 8550424 | -105 |
TSS clone | T | clone | - | 8550420 | -101 |
TSS clone | G | clone | - | 8550418 | -99 |
TSS clone | A | clone | - | 8550414 | -95 |
TSS clone | T | clone | - | 8550411 | -92 |
TSS clone | A | clone | - | 8550403 | -84 |
TSS clone | A | clone | - | 8550402 | -83 |
TSS clone | A | clone | - | 8550360 | -41 |
TSS clone | T | clone | - | 8550357 | -38 |
TSS clone | T | clone | - | 8550353 | -34 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTATAAAAT | - | 8550454 | 8550463 | -135 | -144 |
Y Patch | CCTTCCTC | - | 8550433 | 8550440 | -114 | -121 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TACACGTGTA | - | 8550501 | 8550510 | -182 | -191 | |||
AtREG453 | TACACGTGTA | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACACNNG  | |||
REG | CCCAATTA | - | 8550517 | 8550524 | -198 | -205 | |||
AtREG600 | CCCAATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTCCGGTTAAG | - | 8550621 | 8550631 | -302 | -312 | |||
AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG621 | TCCGGTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG501 | CCGGTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG605 | CGGTTAAG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | CGGTTCAA | - | 8550644 | 8550651 | -325 | -332 | |||
AtREG640 | CGGTTCAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |