PlantPromoterDB promoter information of AT4G14960
Summary of Gene (AT4G14960)
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Overview
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Focused view (chromosome 4: 8556919-8555720)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G14960 5'->3' (-) Promoter sequence AT4G14970.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G14960
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | - | 8550418 | -99 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 8550431 | -112 |
| TSS clone | A | clone | - | 8550430 | -111 |
| TSS clone | A | clone | - | 8550429 | -110 |
| TSS clone | C | clone | - | 8550428 | -109 |
| TSS clone | T | clone | - | 8550426 | -107 |
| TSS clone | A | clone | - | 8550425 | -106 |
| TSS clone | G | clone | - | 8550424 | -105 |
| TSS clone | T | clone | - | 8550420 | -101 |
| TSS clone | G | clone | - | 8550418 | -99 |
| TSS clone | A | clone | - | 8550414 | -95 |
| TSS clone | T | clone | - | 8550411 | -92 |
| TSS clone | A | clone | - | 8550403 | -84 |
| TSS clone | A | clone | - | 8550402 | -83 |
| TSS clone | A | clone | - | 8550360 | -41 |
| TSS clone | T | clone | - | 8550357 | -38 |
| TSS clone | T | clone | - | 8550353 | -34 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTATAAAAT | - | 8550454 | 8550463 | -135 | -144 |
| Y Patch | CCTTCCTC | - | 8550433 | 8550440 | -114 | -121 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TACACGTGTA | - | 8550501 | 8550510 | -182 | -191 | |||
| AtREG453 | TACACGTGTA | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| REG | CCCAATTA | - | 8550517 | 8550524 | -198 | -205 | |||
| AtREG600 | CCCAATTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TTCCGGTTAAG | - | 8550621 | 8550631 | -302 | -312 | |||
| AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG621 | TCCGGTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG501 | CCGGTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG605 | CGGTTAAG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | CGGTTCAA | - | 8550644 | 8550651 | -325 | -332 | |||
| AtREG640 | CGGTTCAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||