Summary of Gene (AT4G25730)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT4G25740.1 AT4G25740.2 TSS from cDNA TSS information AT4G25730 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 30 | - | 13106780 | -62 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 13106788 | -70 |
TSS clone | A | clone | - | 13106780 | -62 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCTTCCTC | - | 13106784 | 13106793 | -66 | -75 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGGCCTGT | - | 13106876 | 13106883 | -158 | -165 | |||
AtREG433 | GGGCCTGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | GAAGCCCATCA | - | 13106897 | 13106907 | -179 | -189 | |||
AtREG476 | GAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG635 | GCCCATCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGCCGTTTA | - | 13106909 | 13106918 | -191 | -200 | |||
AtREG377 | GGGCCGTT | PPDB Motif | GCCCA, AAACG(C/G)  | PLACE Motif | GGGCC  | ||||
AtREG613 | GCCGTTTA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |