Summary of Gene (AT4G33520.2)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT4G33520.2 5'->3' (+) Promoter sequence AT4G33500.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 26 | + | 16118951 | -42 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 16118945 | -48 |
TSS clone | A | clone | + | 16118946 | -47 |
TSS clone | A | clone | + | 16118947 | -46 |
TSS clone | A | clone | + | 16118952 | -41 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGTCACG | + | 16118729 | 16118736 | -264 | -257 | |||
AtREG489 | ACGTCACG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
REG | CCCATTAAG | + | 16118782 | 16118790 | -211 | -203 | |||
AtREG396 | CCCATTAA | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
AtREG604 | CCATTAAG | PPDB Motif |   | PLACE Motif | TTAATGG  | ||||
REG | CACACGTGGAC | + | 16118884 | 16118894 | -109 | -99 | |||
AtREG460 | CACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG408 | CACGTGGA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | |||
AtREG513 | ACGTGGAC | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |