PlantPromoterDB promoter information of AT4G33520.2
Summary of Gene (AT4G33520.2)
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Overview
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Focused view (chromosome 4: 16113943-16115142)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G33520.2 5'->3' (+) Promoter sequence AT4G33500.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G33520.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 26 | + | 16118951 | -42 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 16118945 | -48 |
| TSS clone | A | clone | + | 16118946 | -47 |
| TSS clone | A | clone | + | 16118947 | -46 |
| TSS clone | A | clone | + | 16118952 | -41 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGTCACG | + | 16118729 | 16118736 | -264 | -257 | |||
| AtREG489 | ACGTCACG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | CCCATTAAG | + | 16118782 | 16118790 | -211 | -203 | |||
| AtREG396 | CCCATTAA | PPDB Motif | GCCCA | PLACE Motif | TTAATGG | ||||
| AtREG604 | CCATTAAG | PPDB Motif | PLACE Motif | TTAATGG | |||||
| REG | CACACGTGGAC | + | 16118884 | 16118894 | -109 | -99 | |||
| AtREG460 | CACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG408 | CACGTGGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| AtREG513 | ACGTGGAC | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||