Summary of Gene (AT4G39260)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT4G39260.2 AT4G39260.3 AT4G39260.4 TSS from cDNA TSS information AT4G39260 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 515 | - | 18275017 | -59 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 18275021 | -63 |
TSS clone | A | clone | - | 18275017 | -59 |
TSS clone | C | clone | - | 18275016 | -58 |
TSS clone | A | clone | - | 18275015 | -57 |
TSS clone | T | clone | - | 18275014 | -56 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTCTATAAATT | - | 18275044 | 18275054 | -86 | -96 |
Y Patch | TTCTCTTCTT | - | 18274973 | 18274982 | -15 | -24 |
Y Patch | TCTCTCTCTT | - | 18275001 | 18275010 | -43 | -52 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACCCTAGA | - | 18275090 | 18275097 | -132 | -139 | |||
AtREG658 | ACCCTAGA | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | CCCAATTA | - | 18275143 | 18275150 | -185 | -192 | |||
AtREG600 | CCCAATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGTGGGCCTAAC | - | 18275157 | 18275168 | -199 | -210 | |||
AtREG612 | TGTGGGCC | DREB1Aox | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | |||
AtREG482 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG360 | GGGCCTAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG535 | GGCCTAAC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |