Summary of Gene (AT5G03230.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G03230.1 5'->3' (+) Promoter sequence AT5G03220.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | + | 769514 | -122 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 769514 | -122 |
TSS clone | A | clone | + | 769515 | -121 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCTCTATAAAAA | + | 769476 | 769487 | -160 | -149 |
Y Patch | TCTCCTTC | + | 769506 | 769513 | -130 | -123 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGTCGTTTA | + | 769404 | 769412 | -232 | -224 | |||
AtREG569 | TGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG565 | GTCGTTTA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | - | 768866 | AT5G03220.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 768848 | AT5G03220.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCTCC | - | 768834 | 768843 | AT5G03220.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CCGTCCGA | - | 768911 | 768918 | AT5G03220.1 | ||||
AtREG594 | CCGTCCGA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTAAACCGAA | - | 768950 | 768959 | AT5G03220.1 | ||||
AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | GTGGGGTG | - | 769015 | 769022 | AT5G03220.1 | ||||
AtREG618 | GTGGGGTG | PPDB Motif |   | PLACE Motif |   |