Summary of Gene (AT5G03360.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G03360.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 817860 | -94 |
TSS clone peak | A | clone | + | 817864 | -90 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGCTTTAA | + | 817578 | 817585 | -376 | -369 | |||
AtREG545 | GGCTTTAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TATGGCCCATG | + | 817587 | 817597 | -367 | -357 | |||
AtREG479 | TATGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG437 | ATGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG490 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG504 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | GTGGCCCACA | + | 817605 | 817614 | -349 | -340 | |||
AtREG445 | GTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GCCAC, GGGCC, TGGGCY  | ||||
AtREG612 | GGCCCACA | DREB1Aox | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | |||
REG | GACCGTTG | + | 817773 | 817780 | -181 | -174 | |||
AtREG553 | GACCGTTG | Auxin | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |