Summary of Gene (AT5G13200)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G13200 5'->3' (+) Promoter sequence AT5G13190.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 4207015 | -66 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTATAAATT | + | 4206978 | 4206987 | -103 | -94 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CTTATTGG | + | 4206868 | 4206875 | -213 | -206 | |||
AtREG611 | CTTATTGG | PPDB Motif |   | PLACE Motif |   | ||||
REG | AACCGCGTTTTA | + | 4206949 | 4206960 | -132 | -121 | |||
AtREG441 | AACCGCGT | Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG566 | CGCGTTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG564 | GCGTTTTA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 4 | - | 4206379 | AT5G13190.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 4206440 | AT5G13190.1 |
TSS clone | G | clone | - | 4206379 | AT5G13190.1 |
TSS clone | T | clone | - | 4206270 | AT5G13190.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCC | - | 4206351 | 4206358 | AT5G13190.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAAGGCCCATTAAG | - | 4206486 | 4206500 | AT5G13190.1 | ||||
AtREG459 | AAAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG359 | AAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG396 | CCCATTAA | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
AtREG604 | CCATTAAG | PPDB Motif |   | PLACE Motif | TTAATGG  | ||||
REG | ATTAGGCCTTTTGAGCCCAATAT | - | 4206528 | 4206550 | AT5G13190.1 | ||||
AtREG506 | ATTAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG459 | GGCCTTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG485 | TGAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG533 | GAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG509 | CCCAATAT | PPDB Motif |   | PLACE Motif |   |