Summary of Gene (AT5G13580)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT5G13580.1 TSS from cDNA TSS information AT5G13580 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 4370767 | -112 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | ATCTATAAATA | + | 4370726 | 4370736 | -153 | -143 |
Y Patch | CTCTTCTTTCCT | + | 4370771 | 4370782 | -108 | -97 |
Y Patch | TTTCTTCTCC | + | 4370785 | 4370794 | -94 | -85 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGCCTAAA | + | 4370495 | 4370502 | -384 | -377 | |||
AtREG430 | GGCCTAAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGCCTAAA | + | 4370515 | 4370522 | -364 | -357 | |||
AtREG430 | GGCCTAAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | AGCCCAAC | + | 4370703 | 4370710 | -176 | -169 | |||
AtREG574 | AGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |