Summary of Gene (AT5G20180.2)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G20180.2 5'->3' (+) Promoter sequence AT5G20160.1
AT5G20160.2 AT5G20160.3 AT5G20165.1 AT5G20165.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 15 | + | 6810948 | -364 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 6810951 | -361 |
TSS clone | G | clone | + | 6810965 | -347 |
TSS clone | T | clone | + | 6810967 | -345 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTTCTTC | + | 6810966 | 6810974 | -346 | -338 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTAATGGG | + | 6810686 | 6810693 | -626 | -619 | |||
AtREG396 | TTAATGGG | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
REG | GGGTCAAA | + | 6810844 | 6810851 | -468 | -461 | |||
AtREG592 | GGGTCAAA | PPDB Motif |   | PLACE Motif | TTGAC, TTGACC  | ||||
REG | TAAAGCCCATTAAAAGCCCAAAA | + | 6810876 | 6810898 | -436 | -414 | |||
AtREG365 | TAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG372 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG396 | CCCATTAA | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
AtREG549 | TAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG409 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG469 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG529 | GCCCAAAA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 6805195 | AT5G20160.2, AT5G20160.1, AT5G20160.3 |
TSS clone peak | A | clone | - | 6805177 | AT5G20160.2, AT5G20160.1, AT5G20160.3 |
TSS clone | G | clone | - | 6805176 | AT5G20160.2, AT5G20160.1, AT5G20160.3 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CCAGGCCCATTAA | - | 6805235 | 6805247 | AT5G20160.1, AT5G20160.2, AT5G20160.3 | ||||
AtREG619 | CCAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG370 | CAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG396 | CCCATTAA | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
REG | CATGGGCCGAA | - | 6805260 | 6805270 | AT5G20160.1, AT5G20160.2, AT5G20160.3 | ||||
AtREG504 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG393 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG427 | GGGCCGAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | CGGTTAAG | - | 6805280 | 6805287 | AT5G20160.1, AT5G20160.2, AT5G20160.3 | ||||
AtREG605 | CGGTTAAG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | AAAGTCAA | - | 6805300 | 6805307 | AT5G20160.1, AT5G20160.2, AT5G20160.3 | ||||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | TTTTGGGCTTTAA | - | 6805353 | 6805365 | AT5G20160.1, AT5G20160.2, AT5G20160.3 | ||||
AtREG529 | TTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG469 | TTTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG365 | GGGCTTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG545 | GGCTTTAA | PPDB Motif |   | PLACE Motif |   |