Summary of Gene (AT5G22440.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT5G22450.1 TSS from cDNA TSS information AT5G22440.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | - | 7436644 | -158 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 7436654 | -168 |
TSS clone | T | clone | - | 7436651 | -165 |
TSS clone | G | clone | - | 7436644 | -158 |
TSS clone | T | clone | - | 7436643 | -157 |
TSS clone | T | clone | - | 7436642 | -156 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTTC | - | 7436606 | 7436613 | -120 | -127 |
Y Patch | TCTTTCTCT | - | 7436645 | 7436653 | -159 | -167 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGTGGGCCTAAATACTGGGCTTTAA | - | 7436730 | 7436754 | -244 | -268 | |||
AtREG612 | TGTGGGCC | DREB1Aox | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | |||
AtREG482 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG360 | GGGCCTAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG430 | GGCCTAAA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG434 | TACTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG365 | GGGCTTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG545 | GGCTTTAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATAAGGCCTATA | - | 7436773 | 7436784 | -287 | -298 | |||
AtREG425 | ATAAGGCC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG649 | AGGCCTAT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG487 | GGCCTATA | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGCTTTAA | - | 7436797 | 7436804 | -311 | -318 | |||
AtREG545 | GGCTTTAA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |