Summary of Gene (AT5G25240)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G25240 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | T | clone | - | 8747197 | -23 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCTATATATAGT | - | 8747225 | 8747236 | -51 | -62 |
Y Patch | TCTCTTCCT | - | 8747210 | 8747218 | -36 | -44 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGCCACGTGTCC | - | 8747249 | 8747261 | -75 | -87 | |||
AtREG508 | ACGCCACG | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG371 | CGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC  | |||
AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC  | |||
AtREG472 | ACGTGTCC | ABA, DREB1Aox, Drought | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
REG | CAACGGTC | - | 8747265 | 8747272 | -91 | -98 | |||
AtREG553 | CAACGGTC | Auxin | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |