Summary of Gene (AT5G27640.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G27640.1 5'->3' (-) Promoter sequence AT5G27650.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 13 | - | 9785240 | -481 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 9785288 | -529 |
TSS clone | A | clone | - | 9785287 | -528 |
TSS clone | T | clone | - | 9785220 | -461 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCTTCTT | - | 9785223 | 9785234 | -464 | -475 |
Y Patch | CTCCTTCTTCCTC | - | 9785247 | 9785259 | -488 | -500 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GACGTCGT | - | 9785288 | 9785295 | -529 | -536 | |||
AtREG431 | GACGTCGT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
REG | ATAAGCCC | - | 9785308 | 9785315 | -549 | -556 | |||
AtREG462 | ATAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATTGGGCTTACCCGGCCCATATA | - | 9785323 | 9785346 | -564 | -587 | |||
AtREG418 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG402 | ATTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG404 | CCCGGCCC | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | |||
AtREG457 | CCGGCCCA | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | |||
AtREG380 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG364 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG432 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG620 | CCCATATA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |