PlantPromoterDB promoter information of AT5G46800.1
Summary of Gene (AT5G46800.1)
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Overview
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Focused view (chromosome 5: 18990810-18989611)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G46800.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G46800.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | - | 18990776 | -966 |
| TSS peak | G | 2 | - | 18990594 | -784 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 18990747 | -937 |
| TSS clone | G | clone | - | 18990746 | -936 |
| TSS clone | G | clone | - | 18990641 | -831 |
| TSS clone | T | clone | - | 18990633 | -823 |
| TSS clone | T | clone | - | 18990561 | -751 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGGCCCATCT | - | 18990962 | 18990972 | -1152 | -1162 | |||
| AtREG368 | ACGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG380 | CGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG403 | GGCCCATC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG572 | GCCCATCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TGGGCTGA | - | 18990984 | 18990991 | -1174 | -1181 | |||
| AtREG609 | TGGGCTGA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||