Summary of Gene (AT5G47230.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G47230.1 5'->3' (+) Promoter sequence AT5G47229.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 13 | + | 19180015 | -57 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 19179939 | -133 |
TSS clone | A | clone | + | 19180019 | -53 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TGTATATATAC | + | 19179982 | 19179992 | -90 | -80 |
Y Patch | CTCCCTCTTCTCT | + | 19180002 | 19180014 | -70 | -58 |
Y Patch | TCTTCTTCCTTCTCT | + | 19180027 | 19180041 | -45 | -31 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AGTCGGTC | + | 19179774 | 19179781 | -298 | -291 | |||
AtREG638 | AGTCGGTC | DREB1Aox, ABA | PPDB Motif | CCGAC  | PLACE Motif | CCGAC, RCCGAC  | |||
REG | ATCCAACGG | + | 19179787 | 19179795 | -285 | -277 | |||
AtREG586 | ATCCAACG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
AtREG554 | TCCAACGG | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |