Summary of Gene (AT5G52180.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G52180.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 21202450 | -909 |
TSS peak | A | 15 | - | 21201590 | -49 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 21201575 | -34 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | ATATAAGA | - | 21202481 | 21202488 | -940 | -947 |
Y Patch | TCTTCTTCT | - | 21201577 | 21201585 | -36 | -44 |
Y Patch | CTCTCTTC | - | 21201591 | 21201598 | -50 | -57 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTAAAGCCCATTGGGCCTTTT | - | 21201637 | 21201657 | -96 | -116 | |||
AtREG545 | TTAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG365 | TAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG372 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG551 | GCCCATTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG461 | CATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG359 | GGGCCTTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG459 | GGCCTTTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | AAACCGAACCGAACCGGAA | - | 21202546 | 21202564 | -1005 | -1023 | |||
AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG556 | AACCGAACCGAAC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG451 | ACCGAACCGAACC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG456 | CCGAACCGAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG575 | CGAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |