Summary of Gene (AT5G61380)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G61380 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 17 | + | 24675084 | -456 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 24675085 | -455 |
TSS clone | G | clone | + | 24675087 | -453 |
TSS clone | C | clone | + | 24675107 | -433 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTTT | + | 24675035 | 24675042 | -505 | -498 |
Y Patch | TCTTTCTCTTCTC | + | 24675093 | 24675105 | -447 | -435 |
Y Patch | CTCTTCTT | + | 24675107 | 24675114 | -433 | -426 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GATGACGTGGCCTTTT | + | 24674827 | 24674842 | -713 | -698 | |||
AtREG578 | GATGACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
AtREG483 | ATGACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG419 | TGACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG388 | GACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG459 | GGCCTTTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | GTCCACGTCATC | + | 24674902 | 24674913 | -638 | -627 | |||
AtREG513 | GTCCACGT | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG419 | CCACGTCA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG483 | CACGTCAT | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG578 | ACGTCATC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
REG | GGCCTAAA | + | 24674919 | 24674926 | -621 | -614 | |||
AtREG430 | GGCCTAAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCATTAAG | + | 24674942 | 24674949 | -598 | -591 | |||
AtREG604 | CCATTAAG | PPDB Motif |   | PLACE Motif | TTAATGG  | ||||
REG | CAACGGTC | + | 24675008 | 24675015 | -532 | -525 | |||
AtREG553 | CAACGGTC | Auxin | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |