Summary of Gene (AT5G67480)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT5G67480.2 TSS from cDNA TSS information AT5G67480 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 13 | - | 26932914 | -418 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 26932924 | -428 |
TSS clone | A | clone | - | 26932923 | -427 |
TSS clone | T | clone | - | 26932917 | -421 |
TSS clone | A | clone | - | 26932914 | -418 |
TSS clone | T | clone | - | 26932913 | -417 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTTATATAATG | - | 26932946 | 26932956 | -450 | -460 |
Y Patch | CTCTTTCT | - | 26932885 | 26932892 | -389 | -396 |
Y Patch | TTTCTTCTC | - | 26932896 | 26932904 | -400 | -408 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CACGCGCC | - | 26933134 | 26933141 | -638 | -645 | |||
AtREG486 | CACGCGCC | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | GGCGCGTG | - | 26933176 | 26933183 | -680 | -687 | |||
AtREG486 | GGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | AAAAGGCC | - | 26933189 | 26933196 | -693 | -700 | |||
AtREG459 | AAAAGGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |