PlantPromoterDB promoter information of AT5G67480.2
Summary of Gene (AT5G67480.2)
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Overview
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Focused view (chromosome 5: 26933529-26932330)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G67480.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G67480.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | - | 26932914 | -385 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 26932924 | -395 |
| TSS clone | A | clone | - | 26932923 | -394 |
| TSS clone | T | clone | - | 26932917 | -388 |
| TSS clone | A | clone | - | 26932914 | -385 |
| TSS clone | T | clone | - | 26932913 | -384 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATATAATG | - | 26932946 | 26932956 | -417 | -427 |
| Y Patch | CTCTTTCT | - | 26932885 | 26932892 | -356 | -363 |
| Y Patch | TTTCTTCTC | - | 26932896 | 26932904 | -367 | -375 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACGCGCC | - | 26933134 | 26933141 | -605 | -612 | |||
| AtREG486 | CACGCGCC | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | GGCGCGTG | - | 26933176 | 26933183 | -647 | -654 | |||
| AtREG486 | GGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | AAAAGGCC | - | 26933189 | 26933196 | -660 | -667 | |||
| AtREG459 | AAAAGGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||